CDC-Authored Genomics and Precision Health Publications Database
Last data update: Apr 22, 2024. (Total: 5878 publications)
Query Trace: Kariuki S[original query] |
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Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
Carey ME , Dyson ZA , Ingle DJ , Amir A , Aworh MK , Chattaway MA , Chew KL , Crump JA , Feasey NA , Howden BP , Keddy KH , Maes M , Parry CM , Van Puyvelde S , Webb HE , Afolayan AO , Alexander AP , Anandan S , Andrews JR , Ashton PM , Basnyat B , Bavdekar A , Bogoch II , Clemens JD , da Silva KE , De A , de Ligt J , Diaz Guevara PL , Dolecek C , Dutta S , Ehlers MM , Francois Watkins L , Garrett DO , Godbole G , Gordon MA , Greenhill AR , Griffin C , Gupta M , Hendriksen RS , Heyderman RS , Hooda Y , Hormazabal JC , Ikhimiukor OO , Iqbal J , Jacob JJ , Jenkins C , Jinka DR , John J , Kang G , Kanteh A , Kapil A , Karkey A , Kariuki S , Kingsley RA , Koshy RM , Lauer AC , Levine MM , Lingegowda RK , Luby SP , Mackenzie GA , Mashe T , Msefula C , Mutreja A , Nagaraj G , Nagaraj S , Nair S , Naseri TK , Nimarota-Brown S , Njamkepo E , Okeke IN , Perumal SPB , Pollard AJ , Pragasam AK , Qadri F , Qamar FN , Rahman SIA , Rambocus SD , Rasko DA , Ray P , Robins-Browne R , Rongsen-Chandola T , Rutanga JP , Saha SK , Saha S , Saigal K , Sajib MSI , Seidman JC , Shakya J , Shamanna V , Shastri J , Shrestha R , Sia S , Sikorski MJ , Singh A , Smith AM , Tagg KA , Tamrakar D , Tanmoy AM , Thomas M , Thomas MS , Thomsen R , Thomson NR , Tupua S , Vaidya K , Valcanis M , Veeraraghavan B , Weill FX , Wright J , Dougan G , Argimón S , Keane JA , Aanensen DM , Baker S , Holt KE . Elife 2023 12 |
Malaria in pregnancy (MiP) studies assessing the clinical performance of highly sensitive rapid diagnostic tests (HS-RDT) for Plasmodium falciparum detection.
Ding XC , Incardona S , Serra-Casas E , Charnaud SC , Slater HC , Domingo GJ , Adams ER , Ter Kuile FO , Samuels AM , Kariuki S , Dittrich S . Malar J 2023 22 (1) 60 |
Prevalence of colonization with multidrug-resistant bacteria in communities and hospitals in Kenya.
Ita T , Luvsansharav UO , Smith RM , Mugoh R , Ayodo C , Oduor B , Jepleting M , Oguta W , Ouma C , Juma J , Bigogo G , Kariuki S , Ramay BM , Caudell M , Onyango C , Ndegwa L , Verani JR , Bollinger S , Sharma A , Palmer GH , Call DR , Omulo S . Sci Rep 2022 12 (1) 22290 |
Novel application of one-step pooled molecular testing and maximum likelihood approaches to estimate the prevalence of malaria parasitaemia among rapid diagnostic test negative samples in western Kenya.
Shah MP , Chebore W , Lyles RH , Otieno K , Zhou Z , Plucinski M , Waller LA , Odongo W , Lindblade KA , Kariuki S , Samuels AM , Desai M , Mitchell RM , Shi YP . Malar J 2022 21 (1) 319 |
Temporal trends in molecular markers of drug resistance in Plasmodium falciparum in human blood and profiles of corresponding resistant markers in mosquito oocysts in Asembo, western Kenya.
Zhou Z , Gimnig JE , Sergent SB , Liu Y , Abong'o B , Otieno K , Chebore W , Shah MP , Williamson J , Ter Kuile FO , Hamel MJ , Kariuki S , Desai M , Samuels AM , Walker ED , Shi YP . Malar J 2022 21 (1) 265 |
Diagnostic performance of loop-mediated isothermal amplification and ultra-sensitive rapid diagnostic tests for malaria screening among pregnant women in Kenya.
Samuels AM , Towett O , Seda B , Wiegand RE , Otieno K , Chomba M , Lucchi N , Ljolje D , Schneider K , Gt P , Kwambai TK , Slutsker L , TerKuile FO , Kariuki SK . J Infect Dis 2022 226 (4) 696-707 |
Plasmodium falciparum kelch 13 Mutations, 9 Countries in Africa, 2014-2018.
Schmedes SE , Patel D , Dhal S , Kelley J , Svigel SS , Dimbu PR , Adeothy AL , Kahunu GM , Nkoli PM , Beavogui AH , Kariuki S , Mathanga DP , Koita O , Ishengoma D , Mohamad A , Hawela M , Moriarty LF , Samuels AM , Gutman J , Plucinski MM , Udhayakumar V , Zhou Z , Lucchi NW , Venkatesan M , Halsey ES , Talundzic E . Emerg Infect Dis 2021 27 (7) 1902-1908 |
Development of a new barcode-based, multiplex-PCR, next-generation-sequencing assay and data processing and analytical pipeline for multiplicity of infection detection of Plasmodium falciparum.
Mitchell RM , Zhou Z , Sheth M , Sergent S , Frace M , Nayak V , Hu B , Gimnig J , Ter Kuile F , Lindblade K , Slutsker L , Hamel MJ , Desai M , Otieno K , Kariuki S , Vigfusson Y , Shi YP . Malar J 2021 20 (1) 92 |
Assessment of molecular markers of anti-malarial drug resistance among children participating in a therapeutic efficacy study in western Kenya.
Chebore W , Zhou Z , Westercamp N , Otieno K , Shi YP , Sergent SB , Rondini KA , Svigel SS , Guyah B , Udhayakumar V , Halsey ES , Samuels AM , Kariuki S . Malar J 2020 19 (1) 291 |
Reassessment of High Prevalence Human Adenovirus Detections Among Residents of Two Refugee Centers in Kenya Under Surveillance for Acute Respiratory Infections.
Wu X , Lu X , Schneider E , Ahmed JA , Njenga MK , Breiman RF , Eidex RB , Erdman DD . J Med Virol 2018 91 (3) 385-391 |
Identification and characterization of influenza A viruses in selected domestic animals in Kenya, 2010-2012.
Munyua P , Onyango C , Mwasi L , Waiboci LW , Arunga G , Fields B , Mott JA , Cardona CJ , Kitala P , Nyaga PN , Njenga MK . PLoS One 2018 13 (2) e0192721 |
Microbiome sharing between children, livestock and household surfaces in western Kenya.
Mosites E , Sammons M , Otiang E , Eng A , Noecker C , Manor O , Hilton S , Thumbi SM , Onyango C , Garland-Lewis G , Call DR , Njenga MK , Wasserheit JN , Zambriski JA , Walson JL , Palmer GH , Montgomery J , Borenstein E , Omore R , Rabinowitz PM . PLoS One 2017 12 (2) e0171017 |
Efficacy and Safety of High-Dose Ivermectin for Reducing Malaria Transmission (IVERMAL): Protocol for a Double-Blind, Randomized, Placebo-Controlled, Dose-Finding Trial in Western Kenya.
Smit MR , Ochomo E , Aljayyoussi G , Kwambai T , Abong'o B , Bayoh N , Gimnig J , Samuels A , Desai M , Phillips-Howard PA , Kariuki S , Wang D , Ward S , Ter Kuile FO . JMIR Res Protoc 2016 5 (4) e213 |
Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa.
Wong VK , Holt KE , Okoro C , Baker S , Pickard DJ , Marks F , Page AJ , Olanipekun G , Munir H , Alter R , Fey PD , Feasey NA , Weill FX , Le Hello S , Hart PJ , Kariuki S , Breiman RF , Gordon MA , Heyderman RS , Jacobs J , Lunguya O , Msefula C , MacLennan CA , Keddy KH , Smith AM , Onsare RS , De Pinna E , Nair S , Amos B , Dougan G , Obaro S . PLoS Negl Trop Dis 2016 10 (9) e0004781 |
Assessment of submicroscopic infections and gametocyte carriage of Plasmodium falciparum during peak malaria transmission season in a community-based cross-sectional survey in western Kenya, 2012.
Zhou Z , Mitchell RM , Kariuki S , Odero C , Otieno P , Otieno K , Onyona P , Were V , Wiegand RE , Gimnig JE , Walker ED , Desai M , Shi YP . Malar J 2016 15 (1) 421 |
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings.
Feasey NA , Hadfield J , Keddy KH , Dallman TJ , Jacobs J , Deng X , Wigley P , Barquist Barquist L , Langridge GC , Feltwell T , Harris SR , Mather AE , Fookes M , Aslett M , Msefula C , Kariuki S , Maclennan CA , Onsare RS , Weill FX , Le Hello S , Smith AM , McClelland M , Desai P , Parry CM , Cheesbrough J , French N , Campos J , Chabalgoity JA , Betancor L , Hopkins KL , Nair S , Humphrey TJ , Lunguya O , Cogan TA , Tapia MD , Sow SO , Tennant SM , Bornstein K , Levine MM , Lacharme-Lora L , Everett DB , Kingsley RA , Parkhill J , Heyderman RS , Dougan G , Gordon MA , Thomson NR . Nat Genet 2016 48 (10) 1211-1217 |
Genetic diversity of Plasmodium falciparum parasite by microsatellite markers after scale-up of insecticide-treated bed nets in western Kenya.
Gatei W , Gimnig JE , Hawley W , Ter Kuile F , Odero C , Iriemenam NC , Shah MP , Howard PP , Omosun YO , Terlouw DJ , Nahlen B , Slutsker L , Hamel MJ , Kariuki S , Walker E , Shi YP . Malar J 2014 13 Suppl 1 495 |
Genetic Diversity and Protective Efficacy of the RTS,S/AS01 Malaria Vaccine.
Neafsey DE , Juraska M , Bedford T , Benkeser D , Valim C , Griggs A , Lievens M , Abdulla S , Adjei S , Agbenyega T , Agnandji ST , Aide P , Anderson S , Ansong D , Aponte JJ , Asante KP , Bejon P , Birkett AJ , Bruls M , Connolly KM , D'Alessandro U , Dobano C , Gesase S , Greenwood B , Grimsby J , Tinto H , Hamel MJ , Hoffman I , Kamthunzi P , Kariuki S , Kremsner PG , Leach A , Lell B , Lennon NJ , Lusingu J , Marsh K , Martinson F , Molel JT , Moss EL , Njuguna P , Ockenhouse CF , Ragama Ogutu B , Otieno W , Otieno L , Otieno K , Owusu-Agyei S , Park DJ , Pellé K , Robbins D , Russ C , Ryan EM , Sacarlal J , Sogoloff B , Sorgho H , Tanner M , Theander T , Valea I , Volkman SK , Yu Q , Lapierre D , Birren BW , Gilbert PB , Wirth DF . N Engl J Med 2015 373 (21) 2025-2037 |
In vitro and molecular surveillance for antimalarial drug resistance in Plasmodium falciparum parasites in western Kenya reveals sustained artemisinin sensitivity and increased chloroquine sensitivity.
Lucchi NW , Komino F , Okoth SA , Goldman I , Onyona P , Wiegand RE , Juma E , Shi YP , Barnwell JW , Udhayakumar V , Kariuki S . Antimicrob Agents Chemother 2015 59 (12) 7540-7 |
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.
Wong VK , Baker S , Pickard DJ , Parkhill J , Page AJ , Feasey NA , Kingsley RA , Thomson NR , Keane JA , Weill FX , Edwards DJ , Hawkey J , Harris SR , Mather AE , Cain AK , Hadfield J , Hart PJ , Thieu NT , Klemm EJ , Glinos DA , Breiman RF , Watson CH , Kariuki S , Gordon MA , Heyderman RS , Okoro C , Jacobs J , Lunguya O , Edmunds WJ , Msefula C , Chabalgoity JA , Kama M , Jenkins K , Dutta S , Marks F , Campos J , Thompson C , Obaro S , MacLennan CA , Dolecek C , Keddy KH , Smith AM , Parry CM , Karkey A , Mulholland EK , Campbell JI , Dongol S , Basnyat B , Dufour M , Bandaranayake D , Naseri TT , Singh SP , Hatta M , Newton P , Onsare RS , Isaia L , Dance D , Davong V , Thwaites G , Wijedoru L , Crump JA , De Pinna E , Nair S , Nilles EJ , Thanh DP , Turner P , Soeng S , Valcanis M , Powling J , Dimovski K , Hogg G , Farrar J , Holt KE , Dougan G . Nat Genet 2015 47 (6) 632-9 |
Increasing Prevalence of a Novel Triple-Mutant Dihydropteroate Synthase Genotype in Plasmodium falciparum in Western Kenya.
Lucchi NW , Okoth SA , Komino F , Onyona P , Goldman IF , Ljolje D , Shi YP , Barnwell JW , Udhayakumar V , Kariuki S . Antimicrob Agents Chemother 2015 59 (7) 3995-4002 |
Assessment of molecular markers for anti-malarial drug resistance after the introduction and scale-up of malaria control interventions in western Kenya.
Shah M , Omosun Y , Lal A , Odero C , Gatei W , Otieno K , Gimnig JE , Kuile Fter , Hawley WA , Nahlen B , Kariuki S , Walker E , Slutsker L , Hamel M , Shi YP . Malar J 2015 14 (75) 75 |
Prevalence and diversity of small mammal-associated Bartonella species in rural and urban Kenya.
Halliday JE , Knobel DL , Agwanda B , Bai Y , Breiman RF , Cleaveland S , Njenga MK , Kosoy M . PLoS Negl Trop Dis 2015 9 (3) e0003608 |
Absence of putative artemisinin resistance mutations among Plasmodium falciparum in Sub-Saharan Africa: a molecular epidemiologic study.
Taylor SM , Parobek CM , DeConti DK , Kayentao K , Coulibaly SO , Greenwood BM , Tagbor H , Williams J , Bojang K , Njie F , Desai M , Kariuki S , Gutman J , Mathanga DP , Mårtensson A , Ngasala B , Conrad MD , Rosenthal PJ , Tshefu AK , Moormann AM , Vulule JM , Doumbo OK , Ter Kuile FO , Meshnick SR , Bailey JA , Juliano JJ . J Infect Dis 2014 211 (5) 680-8 |
Polymorphisms in Plasmodium falciparum chloroquine resistance transporter and multidrug resistance 1 genes: parasite risk factors that affect treatment outcomes for P. falciparum malaria after artemether-lumefantrine and artesunate-amodiaquine.
Venkatesan M , Gadalla NB , Stepniewska K , Dahal P , Nsanzabana C , Moriera C , Price RN , Martensson A , Rosenthal PJ , Dorsey G , Sutherland CJ , Guerin P , Davis TM , Menard D , Adam I , Ademowo G , Arze C , Baliraine FN , Berens-Riha N , Bjorkman A , Borrmann S , Checchi F , Dhorda MD , Djimde AA , El-Sayed BB , Eshetu T , Eyase F , Falade C , Faucher JF , Froberg G , Grivoyannis A , Hamour S , Houze S , Johnson J , Kamugisha E , Kariuki S , Kiechel JR , Kironde F , LeBras PE , Malmberg M , Mwai L , Ngasala B , Nosten F , Nsobya SL , Oguike AN , Otienoburu SD , Ogutu B , Ouedraogo JB , Piola P , Rombo L , Schramm B , Some AF , Thwing J , Ursing J , Wong RP , Zeynudin A , Zongo I , Plowe CV , Sibley CH . Am J Trop Med Hyg 2014 91 (4) 833-843 |
Molecular diagnosis of malaria by photo-induced electron transfer fluorogenic primers: PET-PCR.
Lucchi NW , Narayanan J , Karell MA , Xayavong M , Kariuki S , Dasilva AJ , Hill V , Udhayakumar V . PLoS One 2013 8 (2) e56677 |
Multilocus variable-number tandem-repeat analysis of Mycoplasma pneumoniae clinical isolates from 1962 to the present: a retrospective study.
Benitez AJ , Diaz MH , Wolff BJ , Pimentel G , Njenga MK , Estevez A , Winchell JM . J Clin Microbiol 2012 50 (11) 3620-6 |
Temporal trends of sulphadoxine-pyrimethamine (SP) drug-resistance molecular markers in Plasmodium falciparum parasites from pregnant women in western Kenya.
Iriemenam NC , Shah M , Gatei W , van Eijk AM , Ayisi J , Kariuki S , Vanden Eng J , Owino SO , Lal AA , Omosun YO , Otieno K , Desai M , Ter Kuile FO , Nahlen B , Moore J , Hamel MJ , Ouma P , Slutsker L , Shi YP . Malar J 2012 11 (1) 134 |
Molecular epidemiology of geographically dispersed Vibrio cholerae, Kenya, January 2009-May 2010
Mohamed AA , Oundo J , Kariuki SM , Boga HI , Sharif SK , Akhwale W , Omolo J , Amwayi AS , Mutonga D , Kareko D , Njeru M , Li S , Breiman RF , Stine OC . Emerg Infect Dis 2012 18 (6) 925-31 |
Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens.
Kodani M , Yang G , Conklin LM , Travis TC , Whitney CG , Anderson LJ , Schrag SJ , Taylor TH Jr , Beall BW , Breiman RF , Feikin DR , Njenga MK , Mayer LW , Oberste MS , Tondella ML , Winchell J , Lindstrom S , Erdman DD , Fields BS . J Clin Microbiol 2011 49 (6) 2175-82 |
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- Page last updated:Apr 22, 2024
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